Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| his kinase a domain protein | M099_2861 | Not Available | Negative | 3148357 - 3152244 | 148510.0 |
| hypothetical protein | M099_2862 | Not Available | Negative | 3152257 - 3152385 | 5180.3 |
| glycosyl hydrolase family 65 central catalytic domain protein | M099_2863 | Not Available | Negative | 3152449 - 3154905 | 92116.2 |
| peptidase m16 inactive domain protein | M099_2864 | Not Available | Negative | 3155004 - 3156224 | 46465.1 |
| putative lysine decarboxylase family protein | M099_2865 | Not Available | Positive | 3156329 - 3156862 | 19738.9 |
| sis domain protein | M099_2866 | Not Available | Positive | 3156880 - 3157482 | 21797.5 |
| pfkb carbohydrate kinase family protein | M099_2867 | Not Available | Positive | 3157593 - 3158513 | 34622.3 |
| glycosyl hydrolases 18 family protein | M099_2868 | Not Available | Positive | 3158553 - 3159590 | 38584.8 |
| peptidase m1 family protein | M099_2869 | Not Available | Negative | 3159601 - 3162126 | 97512.4 |
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | M099_2870 | Not Available | Negative | 3162127 - 3163221 | 41490.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

