Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydrodipicolinate reductase | M099_2851 | Not Available | Positive | 3135602 - 3136357 | 27422.6 |
| signal peptidase i | M099_2852 | Not Available | Positive | 3136361 - 3137785 | 55209.5 |
| signal peptidase i | M099_2853 | Not Available | Positive | 3137823 - 3138686 | 32796.6 |
| wbqc-like family protein | M099_2854 | Not Available | Positive | 3138686 - 3139342 | 25575.3 |
| short chain dehydrogenase family protein | M099_2855 | Not Available | Positive | 3139347 - 3140159 | 28669.7 |
| mannonate dehydratase | M099_2856 | Not Available | Positive | 3140253 - 3141374 | 42308.0 |
| tonb-linked outer membrane, susc/raga family protein | M099_2857 | Not Available | Positive | 3141578 - 3144832 | 120247.0 |
| starch-binding associating with outer membrane family protein | M099_2858 | Not Available | Positive | 3144866 - 3146686 | 68178.7 |
| hypothetical protein | M099_2859 | Not Available | Negative | 3146710 - 3146832 | 4599.64 |
| type i phosphodiesterase / nucleotide pyrophosphatase family protein | M099_2860 | Not Available | Positive | 3146831 - 3148300 | 57398.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

