Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase/fumarate reductase, flavoprotein subunit | M099_2831 | Not Available | Positive | 3111943 - 3113901 | 72651.5 |
| 2fe-2s iron-sulfur cluster binding domain protein | M099_2832 | Not Available | Positive | 3113922 - 3114677 | 27308.1 |
| bacterial regulatory helix-turn-helix s, arac family protein | M099_2833 | Not Available | Negative | 3114742 - 3115575 | 32239.7 |
| hypothetical protein | M099_2834 | Not Available | Positive | 3115968 - 3116099 | 5027.28 |
| hypothetical protein | M099_2835 | Not Available | Negative | 3116101 - 3117084 | 35284.9 |
| putative lipoprotein | M099_2836 | Not Available | Negative | 3117133 - 3117984 | 30752.0 |
| hypothetical protein | M099_2837 | Not Available | Negative | 3118095 - 3119348 | 47648.9 |
| hypothetical protein | M099_2838 | Not Available | Negative | 3119890 - 3120009 | 4448.45 |
| f5/8 type c domain protein | M099_2839 | Not Available | Positive | 3120084 - 3121940 | 69538.5 |
| dna protecting protein dpra | M099_2840 | Not Available | Negative | 3122021 - 3123136 | 40956.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

