Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-galactosidase | M099_2791 | Not Available | Negative | 3051193 - 3053541 | 88383.6 |
| carbohydrate binding domain protein | M099_2792 | Not Available | Negative | 3053558 - 3056056 | 92400.4 |
| endo-1,4-beta-xylanase d domain protein | M099_2793 | Not Available | Negative | 3056084 - 3058027 | 73346.0 |
| hypothetical protein | M099_2794 | Not Available | Positive | 3058051 - 3058188 | 5652.99 |
| hypothetical protein | M099_2795 | Not Available | Negative | 3058245 - 3058367 | 4849.24 |
| tonb-linked outer membrane, susc/raga family protein | M099_2796 | Not Available | Positive | 3058659 - 3061679 | 111121.0 |
| starch-binding associating with outer membrane family protein | M099_2797 | Not Available | Positive | 3061692 - 3063245 | 58382.6 |
| glycosyl hydrolases 43 family protein | M099_2798 | Not Available | Negative | 3063365 - 3064366 | 37714.2 |
| glycosyl hydrolases 43 family protein | M099_2799 | Not Available | Negative | 3064691 - 3065458 | 28763.8 |
| hypothetical protein | M099_2800 | Not Available | Positive | 3065447 - 3065740 | 11219.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

