Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | M099_2781 | Not Available | Negative | 3033060 - 3033239 | 6901.7 |
| aaa domain protein | M099_2782 | Not Available | Negative | 3033302 - 3036385 | 116280.0 |
| exonuclease sbccd, d subunit | M099_2783 | Not Available | Negative | 3036382 - 3037584 | 44927.8 |
| hypothetical protein | M099_2784 | Not Available | Positive | 3037756 - 3038031 | 10421.8 |
| hypothetical protein | M099_2785 | Not Available | Positive | 3038021 - 3038362 | 12875.8 |
| hypothetical protein | M099_2786 | Not Available | Negative | 3038415 - 3040766 | 88878.2 |
| alpha-xylosidase | M099_2787 | Not Available | Negative | 3040820 - 3043279 | 95214.7 |
| starch-binding associating with outer membrane family protein | M099_2788 | Not Available | Negative | 3043349 - 3044983 | 62640.4 |
| tonb-linked outer membrane, susc/raga family protein | M099_2789 | Not Available | Negative | 3045005 - 3047944 | 108446.0 |
| bacterial regulatory helix-turn-helix s, arac family protein | M099_2790 | Not Available | Negative | 3048165 - 3050984 | 107952.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

