Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 'cold-shock' dna-binding domain protein | M099_0253 | Not Available | Positive | 273566 - 274012 | 17045.4 |
| metallo-beta-lactamase superfamily protein | M099_0254 | Not Available | Positive | 274185 - 275012 | 31420.1 |
| rna polymerase sigma factor, sigma-70 family protein | M099_0255 | Not Available | Positive | 275046 - 275597 | 21644.9 |
| hypothetical protein | M099_0256 | Not Available | Positive | 275693 - 276019 | 12662.0 |
| hypothetical protein | M099_0257 | Not Available | Positive | 276031 - 276477 | 17649.5 |
| tonb-linked outer membrane, susc/raga family protein | M099_0258 | Not Available | Positive | 276751 - 279912 | 117858.0 |
| starch-binding associating with outer membrane family protein | M099_0259 | Not Available | Positive | 279936 - 281666 | 65686.7 |
| mazg family protein | M099_0260 | Not Available | Negative | 281860 - 282645 | 30570.4 |
| valine--trna ligase | M099_0261 | Not Available | Positive | 282756 - 285383 | 99787.7 |
| putative membrane protein | M099_0262 | Not Available | Negative | 285564 - 286004 | 16110.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

