Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tpr repeat family protein | M099_2731 | Not Available | Negative | 2989199 - 2990875 | 60821.8 |
| tyrosine recombinase xerd | M099_2732 | Not Available | Negative | 2991017 - 2991958 | 36180.1 |
| 3-dehydroquinate dehydratase, type ii | M099_2733 | Not Available | Positive | 2992025 - 2992447 | 15666.9 |
| pyruvate kinase | M099_2734 | Not Available | Positive | 2992486 - 2993943 | 53997.2 |
| methyltransferase domain protein | M099_2735 | Not Available | Positive | 2993959 - 2994597 | 24383.5 |
| ribosome-binding factor a | M099_2736 | Not Available | Positive | 2994671 - 2995006 | 12972.9 |
| ftsx-like permease family protein | M099_2737 | Not Available | Positive | 2995016 - 2996254 | 45708.0 |
| pyridoxine kinase | M099_2738 | Not Available | Negative | 2996641 - 2997513 | 32692.3 |
| glutamate racemase | M099_2739 | Not Available | Negative | 2997570 - 2998415 | 31392.0 |
| outer membrane family protein | M099_2740 | Not Available | Negative | 2998518 - 2999021 | 19260.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

