Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad dependent epimerase/dehydratase family protein | M099_2701 | Not Available | Negative | 2956633 - 2957586 | 35269.3 |
| 2-amino-3-ketobutyrate coenzyme a ligase | M099_2702 | Not Available | Positive | 2957757 - 2958947 | 43568.4 |
| Trna-arg | Not Available | Not Available | Positive | 2959015 - 2959089 | Not Available |
| acceptor oxidoreductase, alpha subunit | M099_2704 | Not Available | Positive | 2959500 - 2961347 | 66247.6 |
| thiamine pyrophosphate enzyme, c-terminal tpp binding domain protein | M099_2705 | Not Available | Positive | 2961371 - 2962375 | 36538.8 |
| phosphoribosyl transferase domain protein | M099_2706 | Not Available | Negative | 2962532 - 2963191 | 24410.4 |
| phosphoenolpyruvate carboxykinase | M099_2707 | Not Available | Positive | 2963452 - 2965059 | 59092.1 |
| nitroreductase family protein | M099_2708 | Not Available | Positive | 2965183 - 2965815 | 23189.1 |
| gtp-binding protein typa/bipa | M099_2709 | Not Available | Negative | 2965876 - 2967621 | 65248.8 |
| hypothetical protein | M099_2710 | Not Available | Positive | 2967814 - 2967945 | 4737.78 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

