Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | M099_2691 | Not Available | Negative | 2941642 - 2942658 | 38653.9 |
| virulence rhum family protein | M099_2692 | Not Available | Negative | 2942700 - 2943170 | 18238.8 |
| beta-galactosidase | M099_2693 | Not Available | Negative | 2943342 - 2946671 | 125944.0 |
| dna-binding protein hu | M099_2694 | Not Available | Negative | 2946764 - 2947036 | 9278.25 |
| rhomboid family protein | M099_2695 | Not Available | Positive | 2947247 - 2947924 | 25322.4 |
| rhomboid family protein | M099_2696 | Not Available | Positive | 2947905 - 2948798 | 33974.6 |
| endonuclease/exonuclease/phosphatase family protein | M099_2697 | Not Available | Positive | 2948802 - 2949881 | 40291.9 |
| peptidase m3 family protein | M099_2698 | Not Available | Positive | 2949974 - 2951995 | 76469.1 |
| protein-export membrane protein secd | M099_2699 | Not Available | Positive | 2952174 - 2955161 | 109234.0 |
| pfkb carbohydrate kinase family protein | M099_2700 | Not Available | Negative | 2955426 - 2956490 | 38958.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

