Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor plug domain protein | M099_2611 | Not Available | Negative | 2832339 - 2834885 | 96611.4 |
| fecr family protein | M099_2612 | Not Available | Negative | 2834990 - 2835793 | 30939.9 |
| rna polymerase sigma-70 factor, expansion 1 family protein | M099_2613 | Not Available | Negative | 2835863 - 2836372 | 19967.9 |
| hypothetical protein | M099_2614 | Not Available | Positive | 2836376 - 2836528 | 5560.74 |
| susd and ragb outer membrane lipofamily protein | M099_2615 | Not Available | Negative | 2836618 - 2838321 | 63029.3 |
| tonb-linked outer membrane, susc/raga family protein | M099_2616 | Not Available | Negative | 2838321 - 2841362 | 112174.0 |
| rna polymerase sigma-70 factor, expansion 1 family protein | M099_2617 | Not Available | Positive | 2841683 - 2842228 | 21413.0 |
| phosphoribosylglycinamide formyltransferase | M099_2618 | Not Available | Negative | 2842200 - 2842778 | 21414.2 |
| hypothetical protein | M099_2619 | Not Available | Positive | 2842777 - 2842896 | 4532.74 |
| acyl carrier protein | M099_2620 | Not Available | Positive | 2842931 - 2843167 | 8382.75 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

