Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | M099_2581 | Not Available | Positive | 2796153 - 2797004 | 29091.1 |
| tim-barrel, nifr3 family protein | M099_2582 | Not Available | Negative | 2797100 - 2798089 | 37212.5 |
| peptidase u32 family protein | M099_2583 | Not Available | Positive | 2798240 - 2799502 | 47014.9 |
| putative outer membrane protein, probably involved in nutrient binding protein | M099_2584 | Not Available | Negative | 2799790 - 2801340 | 58710.9 |
| tonb-linked outer membrane, susc/raga family protein | M099_2585 | Not Available | Negative | 2801356 - 2804400 | 112621.0 |
| arginine--trna ligase | M099_2586 | Not Available | Positive | 2805052 - 2806872 | 68031.7 |
| ribonuclease h | M099_2587 | Not Available | Positive | 2806873 - 2807499 | 23847.5 |
| type i phosphodiesterase / nucleotide pyrophosphatase family protein | M099_2588 | Not Available | Positive | 2807515 - 2809341 | 68080.2 |
| dolichyl-phosphate-mannose-mannosyltransferase family protein | M099_2589 | Not Available | Negative | 2809425 - 2811149 | 65363.0 |
| gtra-like family protein | M099_2590 | Not Available | Positive | 2811236 - 2811610 | 14231.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

