Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-aspartate oxidase | M099_2551 | Not Available | Negative | 2761799 - 2763379 | 58967.6 |
| hypothetical protein | M099_2552 | Not Available | Positive | 2763535 - 2764095 | 21549.0 |
| hypothetical protein | M099_2553 | Not Available | Positive | 2764171 - 2764581 | 15494.5 |
| hypothetical protein | M099_2554 | Not Available | Positive | 2764585 - 2764998 | 15716.4 |
| dihydrolipoyl dehydrogenase | M099_2555 | Not Available | Positive | 2765014 - 2766354 | 47679.7 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | M099_2556 | Not Available | Positive | 2766354 - 2767754 | 52320.6 |
| kdui/iolb family protein | M099_2557 | Not Available | Positive | 2767925 - 2768767 | 31850.9 |
| short chain dehydrogenase family protein | M099_2558 | Not Available | Positive | 2768804 - 2769607 | 28590.5 |
| hypothetical protein | M099_2559 | Not Available | Positive | 2769704 - 2770876 | 42906.5 |
| polysaccharide deacetylase family protein | M099_2560 | Not Available | Negative | 2770934 - 2771545 | 24627.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

