Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| major facilitator superfamily protein | M099_2431 | Not Available | Negative | 2607860 - 2609158 | 47964.8 |
| glycoside hydrolase 97 family protein | M099_2432 | Not Available | Negative | 2609282 - 2611297 | 75776.0 |
| endonuclease/exonuclease/phosphatase family protein | M099_2433 | Not Available | Negative | 2611485 - 2612330 | 31930.9 |
| susd and ragb outer membrane lipofamily protein | M099_2434 | Not Available | Negative | 2612374 - 2614143 | 66884.9 |
| tonb-linked outer membrane, susc/raga family protein | M099_2435 | Not Available | Negative | 2614167 - 2617568 | 124973.0 |
| hypothetical protein | M099_2436 | Not Available | Negative | 2617664 - 2617810 | 5738.04 |
| putative alpha-1,2-mannosidase | M099_2437 | Not Available | Negative | 2617857 - 2620169 | 87837.8 |
| alpha-1,2-mannosidase family protein | M099_2438 | Not Available | Negative | 2620199 - 2622403 | 83714.1 |
| fecr family protein | M099_2439 | Not Available | Negative | 2622499 - 2623491 | 38023.8 |
| rna polymerase sigma-70 factor, expansion 1 family protein | M099_2440 | Not Available | Negative | 2623520 - 2624095 | 22518.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

