Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth domain protein | M099_2381 | Not Available | Positive | 2550492 - 2550722 | 9115.21 |
| hypothetical protein | M099_2382 | Not Available | Positive | 2550745 - 2552067 | 48680.5 |
| hypothetical protein | M099_2383 | Not Available | Positive | 2552388 - 2552492 | 3647.59 |
| tonb-dependent receptor plug domain protein | M099_2384 | Not Available | Positive | 2552493 - 2553249 | 27848.5 |
| starch-binding associating with outer membrane family protein | M099_2385 | Not Available | Positive | 2553277 - 2555163 | 72119.2 |
| tonb-linked outer membrane, susc/raga family protein | M099_2386 | Not Available | Positive | 2555629 - 2558784 | 114886.0 |
| susd and ragb outer membrane lipofamily protein | M099_2387 | Not Available | Positive | 2558815 - 2560776 | 73622.8 |
| dihydro-orotase-like family protein | M099_2388 | Not Available | Negative | 2561088 - 2561531 | 16519.6 |
| amp-binding protein | M099_2389 | Not Available | Negative | 2561597 - 2563249 | 62298.4 |
| helix-turn-helix family protein | M099_2390 | Not Available | Negative | 2563333 - 2563887 | 20522.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

