Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysm domain protein | M099_2261 | Not Available | Positive | 2438244 - 2440052 | 68473.0 |
| outer membrane beta-barrel domain protein | M099_2262 | Not Available | Positive | 2440052 - 2440735 | 25699.9 |
| hypothetical protein | M099_2263 | Not Available | Negative | 2440819 - 2441139 | 12123.5 |
| rna polymerase rpb6 family protein | M099_2264 | Not Available | Negative | 2441521 - 2441856 | 12965.3 |
| outer membrane assembly lipoyfio family protein | M099_2265 | Not Available | Negative | 2441873 - 2442709 | 32450.3 |
| excinuclease abc subunit b | M099_2266 | Not Available | Positive | 2442875 - 2444908 | 77715.7 |
| hypothetical protein | M099_2267 | Not Available | Positive | 2444919 - 2445092 | 6300.59 |
| phosphate-selective porin o and p family protein | M099_2268 | Not Available | Negative | 2445075 - 2446055 | 37472.6 |
| hypothetical protein | M099_2269 | Not Available | Negative | 2446279 - 2446881 | 22823.7 |
| exonuclease family protein | M099_2270 | Not Available | Negative | 2446915 - 2447403 | 18589.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

