Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spou rrna methylase family protein | M099_2241 | Not Available | Positive | 2414920 - 2415675 | 27943.9 |
| hypothetical protein | M099_2242 | Not Available | Negative | 2415747 - 2416070 | 12222.7 |
| hypothetical protein | M099_2243 | Not Available | Negative | 2416086 - 2417060 | 37281.1 |
| signal peptidase (spase) ii family protein | M099_2244 | Not Available | Negative | 2417064 - 2417702 | 24149.8 |
| prokaryotic dksa/trar c4-type zinc finger family protein | M099_2245 | Not Available | Negative | 2417812 - 2418192 | 14347.1 |
| isoleucine--trna ligase | M099_2246 | Not Available | Negative | 2418216 - 2421704 | 132133.0 |
| bacterial regulatory helix-turn-helix s, arac family protein | M099_2247 | Not Available | Negative | 2421913 - 2422746 | 32094.1 |
| peptidase m48 family protein | M099_2248 | Not Available | Negative | 2423245 - 2424063 | 29692.7 |
| hypothetical protein | M099_2249 | Not Available | Negative | 2424138 - 2424272 | 5380.63 |
| kdpg and khg aldolase family protein | M099_2250 | Not Available | Negative | 2424317 - 2424991 | 23919.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

