Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | M099_2221 | Not Available | Negative | 2402295 - 2402429 | 4652.56 |
| tetrapyrrole (corrin/porphyrin) methylases family protein | M099_2222 | Not Available | Positive | 2402482 - 2403009 | 20113.1 |
| hypothetical protein | M099_2223 | Not Available | Negative | 2402972 - 2403385 | 15760.8 |
| mannitol dehydrogenase rossmann domain protein | M099_2224 | Not Available | Negative | 2403487 - 2404926 | 53907.1 |
| glucuronate isomerase family protein | M099_2225 | Not Available | Positive | 2405252 - 2406658 | 54291.7 |
| hypothetical protein | M099_2226 | Not Available | Negative | 2406625 - 2406750 | 4784.82 |
| ahpc/tsa family protein | M099_2227 | Not Available | Negative | 2406747 - 2407946 | 46105.1 |
| transcriptional regulatory family protein | M099_2228 | Not Available | Positive | 2408128 - 2409090 | 37688.8 |
| metallo-beta-lactamase superfamily protein | M099_2229 | Not Available | Positive | 2409244 - 2410047 | 29900.9 |
| Trna-lys | Not Available | Not Available | Positive | 2410136 - 2410211 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

