Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobalamin biosynthesis protein cobd | M099_2181 | Not Available | Negative | 2351441 - 2352223 | 28860.7 |
| aminotransferase class i and ii family protein | M099_2182 | Not Available | Negative | 2352355 - 2353365 | 38761.7 |
| cobyric acid synthase cobq | M099_2183 | Not Available | Negative | 2353358 - 2354848 | 55366.6 |
| cob(i)alamin adenosyltransferase | M099_2184 | Not Available | Negative | 2354848 - 2355387 | 20824.1 |
| cobyrinic acid a,c-diamide synthase | M099_2185 | Not Available | Negative | 2355420 - 2356748 | 49093.6 |
| aspt/yide/ybjl antiporter duplication domain protein | M099_2186 | Not Available | Positive | 2356984 - 2358672 | 60780.7 |
| tonb dependent receptor family protein | M099_2187 | Not Available | Positive | 2359065 - 2361242 | 81246.7 |
| tonb dependent receptor family protein | M099_2188 | Not Available | Positive | 2361615 - 2363675 | 78366.5 |
| cobalt chelatase family protein | M099_2189 | Not Available | Positive | 2363709 - 2364905 | 45142.5 |
| putative anaerobic ribonucleoside-triphosphate reductase activating protein | M099_2190 | Not Available | Negative | 2364955 - 2365308 | 13398.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

