Phocaeicola vulgatus str. 3975 RP4

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus str. 3975 RP4 is a Gram-positive, anaerobic bacterium characterized by its rod shape and absence of mobility. This organism is classified as host-associated, indicating a relationship with a specific host environment, yet it is also described as free-living, suggesting it can survive independently under certain conditions. The bacterium has a unique structural profile; it possesses two membranes and contains a single replicon. Its cell arrangement is typically observed as singles, which may influence its interactions within its habitat. P. vulgatus str. 3975 RP4 is mesophilic, thriving within a moderate temperature range that is conducive to its metabolic processes. The presence of flagella indicates potential for motility in a broader context, but the organism itself is not mobile. This trait may play a role in its ecological niche, as it relies on environmental conditions for distribution rather than active movement. Understanding the characteristics of P. vulgatus str. 3975 RP4 contributes to insights into its role in the microbiome of hosts, where it may participate in various biotic interactions. Its anaerobic nature and free-living capabilities suggest it could be involved in nutrient cycling within its habitat, influencing the availability of resources and the overall microbial community structure. Accessions indicate that its genetic information is cataloged for further study, providing a basis for exploring its functions and potential applications in microbiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strain3975 RP4

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus str. 3975 RP4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus str. 3975 RP4 gbf3975RP4.contig.183, whole

Gene Summary

Adenine Count

1474624 bp

Thymine Count

1407491 bp

Guanine Count

1006342 bp

Cytosine Count

1101240 bp

Genome Length

4989697 bp

Protein-coding Genes

4567 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinM099_2091Not AvailableNegative2267430 - 226867747087.9
nad binding domain of 6-phosphogluconate dehydrogenase family proteinM099_2092Not AvailableNegative2268786 - 226970633087.2
phosphoserine transaminaseM099_2093Not AvailableNegative2269814 - 227088439557.6
helicase conserved c-terminal domain proteinM099_2094Not AvailableNegative2271139 - 227245849651.0
ubiquinone oxidoreductase, na(+)-translocating, f subunitM099_2095Not AvailableNegative2272549 - 227382347059.9
ubiquinone oxidoreductase, na(+)-translocating, e subunitM099_2096Not AvailableNegative2273842 - 227443821276.9
ubiquinone oxidoreductase, na(+)-translocating, d subunitM099_2097Not AvailableNegative2274463 - 227510123121.2
ubiquinone oxidoreductase, na(+)-translocating, c subunitM099_2098Not AvailableNegative2275120 - 227574923002.3
ubiquinone oxidoreductase, na(+)-translocating, b subunitM099_2099Not AvailableNegative2275808 - 227701643554.0
ubiquinone oxidoreductase, na(+)-translocating, a subunitM099_2100Not AvailableNegative2277045 - 227839449582.9

Displaying genes 2101 – 2110 of 4688 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.