Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal subunit interface protein | M099_2011 | Not Available | Negative | 2184554 - 2184853 | 11325.7 |
| phage integrase family protein | M099_2012 | Not Available | Negative | 2184868 - 2185749 | 34003.6 |
| ribosomal protein s21 | M099_2013 | Not Available | Negative | 2185827 - 2186018 | 7526.36 |
| metallopeptidase m24 family protein | M099_2014 | Not Available | Positive | 2186187 - 2187968 | 66941.2 |
| bacterial transferase hexapeptide family protein | M099_2015 | Not Available | Positive | 2187978 - 2188502 | 18518.4 |
| outer membrane autotransporter barrel domain protein | M099_2016 | Not Available | Positive | 2188548 - 2189039 | 18002.5 |
| acetyltransferase family protein | M099_2017 | Not Available | Positive | 2189153 - 2190109 | 36767.9 |
| response regulator | M099_2018 | Not Available | Negative | 2190160 - 2190861 | 26528.4 |
| his kinase a domain protein | M099_2019 | Not Available | Negative | 2190886 - 2192271 | 53356.8 |
| cna b-type domain protein | M099_2020 | Not Available | Positive | 2192393 - 2194690 | 87743.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

