Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homeo-like domain protein | M099_1931 | Not Available | Negative | 2112064 - 2112615 | 21588.3 |
| transposase dde domain protein | M099_1932 | Not Available | Positive | 2112732 - 2113049 | 11991.6 |
| hypothetical protein | M099_1933 | Not Available | Negative | 2113363 - 2114757 | 54638.7 |
| endonuclease/exonuclease/phosphatase family protein | M099_1934 | Not Available | Negative | 2114910 - 2116328 | 53999.0 |
| glycosyl hydrolase family 20, catalytic domain protein | M099_1935 | Not Available | Negative | 2116360 - 2117985 | 63035.7 |
| bacterial alpha-l-rhamnosidase family protein | M099_1936 | Not Available | Negative | 2117993 - 2120347 | 89667.8 |
| starch-binding associating with outer membrane family protein | M099_1937 | Not Available | Negative | 2120425 - 2122215 | 69535.5 |
| tonb-linked outer membrane, susc/raga family protein | M099_1938 | Not Available | Negative | 2122227 - 2125667 | 129854.0 |
| fecr family protein | M099_1939 | Not Available | Negative | 2125806 - 2126735 | 36336.7 |
| rna polymerase sigma-70 factor, expansion 1 family protein | M099_1940 | Not Available | Negative | 2126842 - 2127405 | 22325.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

