Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| electron transport complex, rnfabcdge type, d subunit | M099_1891 | Not Available | Negative | 2069954 - 2070943 | 35342.5 |
| electron transport complex, rnfabcdge type, c subunit | M099_1892 | Not Available | Negative | 2070958 - 2072295 | 47119.8 |
| electron transport complex, rnfabcdge type, b subunit | M099_1893 | Not Available | Negative | 2072335 - 2073288 | 32597.8 |
| positive regulator of sigma(e), rsec/mucc family protein | M099_1894 | Not Available | Negative | 2073309 - 2073737 | 15752.6 |
| threonine ammonia-lyase | M099_1895 | Not Available | Negative | 2073916 - 2075112 | 42410.4 |
| triose-phosphate transporter family protein | M099_1896 | Not Available | Negative | 2075309 - 2076193 | 32280.9 |
| major facilitator superfamily protein | M099_1897 | Not Available | Negative | 2076260 - 2077450 | 43366.0 |
| glutamate decarboxylase | M099_1898 | Not Available | Positive | 2077756 - 2079156 | 52979.8 |
| glutaminase a | M099_1899 | Not Available | Positive | 2079222 - 2080184 | 34758.9 |
| hypothetical protein | M099_1900 | Not Available | Positive | 2080485 - 2081348 | 31395.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

