Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine racemase, n-terminal domain protein | M099_1871 | Not Available | Positive | 2046081 - 2046749 | 25398.4 |
| fmn-dependent dehydrogenase family protein | M099_1872 | Not Available | Positive | 2046763 - 2047737 | 35553.2 |
| amp-binding enzyme family protein | M099_1873 | Not Available | Positive | 2047914 - 2049572 | 62504.7 |
| hypothetical protein | M099_1874 | Not Available | Positive | 2049819 - 2051210 | 48784.5 |
| hypothetical protein | M099_1875 | Not Available | Positive | 2051249 - 2052721 | 56314.4 |
| cyclic nucleotide-binding domain protein | M099_1876 | Not Available | Negative | 2052718 - 2053296 | 22552.6 |
| hypothetical protein | M099_1877 | Not Available | Negative | 2053571 - 2053684 | 4126.04 |
| peptidase c69 family protein | M099_1878 | Not Available | Positive | 2053760 - 2055037 | 48270.6 |
| papain cysteine protease family protein | M099_1879 | Not Available | Positive | 2055069 - 2056259 | 45290.6 |
| prolyl oligopeptidase family protein | M099_1880 | Not Available | Positive | 2056390 - 2058621 | 84408.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

