Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diaminopimelate decarboxylase | M099_1861 | Not Available | Positive | 2036402 - 2037562 | 42748.4 |
| hypothetical protein | M099_1862 | Not Available | Negative | 2037627 - 2038079 | 17587.0 |
| glycosyl transferase 2 family protein | M099_1863 | Not Available | Positive | 2038338 - 2039495 | 44730.3 |
| hypothetical protein | M099_1864 | Not Available | Positive | 2039694 - 2039819 | 4806.87 |
| hypothetical protein | M099_1865 | Not Available | Positive | 2040653 - 2041273 | 22075.5 |
| ftsx-like permease family protein | M099_1866 | Not Available | Negative | 2041620 - 2042864 | 46918.6 |
| aminotransferase class-v family protein | M099_1867 | Not Available | Negative | 2042866 - 2043972 | 41593.9 |
| hypothetical protein | M099_1868 | Not Available | Positive | 2043973 - 2044089 | 4435.32 |
| l-fucose isomerase, c-terminal domain protein | M099_1869 | Not Available | Positive | 2044234 - 2045469 | 46189.3 |
| hypothetical protein | M099_1870 | Not Available | Positive | 2045568 - 2046047 | 18078.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

