Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoserine dehydrogenase, nad binding domain protein | M099_1711 | Not Available | Positive | 1886544 - 1887263 | 25725.7 |
| d-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain protein | M099_1712 | Not Available | Negative | 1887246 - 1888130 | 32634.2 |
| dnaj domain protein | M099_1713 | Not Available | Positive | 1888237 - 1889019 | 29022.9 |
| peptide chain release factor 3 | M099_1714 | Not Available | Negative | 1889094 - 1890662 | 59982.5 |
| dtdp-4-dehydrorhamnose reductase | M099_1715 | Not Available | Negative | 1890669 - 1891526 | 31996.1 |
| hypothetical protein | M099_1716 | Not Available | Negative | 1891541 - 1892083 | 21312.0 |
| lyse type translocator family protein | M099_1717 | Not Available | Negative | 1892155 - 1892814 | 24319.7 |
| air synthase related, n-terminal domain protein | M099_1718 | Not Available | Positive | 1892965 - 1896669 | 137200.0 |
| his kinase a domain protein | M099_1719 | Not Available | Positive | 1896747 - 1900763 | 154471.0 |
| chromate transporter family protein | M099_1720 | Not Available | Positive | 1900768 - 1901316 | 20451.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

