Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolases 43 family protein | M099_1681 | Not Available | Negative | 1846831 - 1847781 | 35925.9 |
| endoxylanase | M099_1682 | Not Available | Negative | 1847815 - 1848936 | 42054.4 |
| sugar (glycoside-pentoside-hexuronide) transporter domain protein | M099_1683 | Not Available | Negative | 1848976 - 1850469 | 54486.8 |
| glycosyl hydrolases 16 family protein | M099_1684 | Not Available | Negative | 1850797 - 1851588 | 30541.4 |
| phosphoglucosamine mutase | M099_1685 | Not Available | Negative | 1851679 - 1853067 | 50445.6 |
| hypothetical protein | M099_1686 | Not Available | Negative | 1853054 - 1853713 | 25088.7 |
| dhha1 domain protein | M099_1687 | Not Available | Negative | 1853796 - 1854836 | 39348.3 |
| comec/rec2-related domain protein | M099_1688 | Not Available | Negative | 1854886 - 1856805 | 72592.5 |
| ribulose-phosphate 3-epimerase | M099_1689 | Not Available | Negative | 1856852 - 1857505 | 23913.3 |
| outer membrane beta-barrel domain protein | M099_1690 | Not Available | Negative | 1857581 - 1858876 | 48124.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

