Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative membrane protein | M099_0143 | Not Available | Negative | 160400 - 161056 | 24809.8 |
| rna polymerase sigma-54 factor | M099_0144 | Not Available | Negative | 161067 - 162536 | 56144.2 |
| putative xaa-pro aminopeptidase | M099_0145 | Not Available | Positive | 162665 - 162889 | 8660.11 |
| hypothetical protein | M099_0146 | Not Available | Positive | 163122 - 163238 | 4611.31 |
| pyruvate-formate lyase-activating enzyme | M099_0147 | Not Available | Negative | 163239 - 164147 | 33592.1 |
| pyruvate formate lyase family protein | M099_0148 | Not Available | Negative | 164152 - 166512 | 89489.4 |
| phosphoribulokinase / uridine kinase family protein | M099_0149 | Not Available | Negative | 166880 - 168544 | 64379.3 |
| na+/pi-cotransporter family protein | M099_0150 | Not Available | Positive | 168635 - 170326 | 62887.8 |
| na+/pi-cotransporter family protein | M099_0151 | Not Available | Positive | 170479 - 170892 | 15680.8 |
| fkbp-type peptidyl-prolyl cis-trans isomerase family protein | M099_0152 | Not Available | Negative | 170971 - 171837 | 31372.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

