Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate binding module family protein | M099_1671 | Not Available | Negative | 1829180 - 1831636 | 92283.6 |
| hypothetical protein | M099_1672 | Not Available | Positive | 1831787 - 1831903 | 4575.86 |
| response regulator | M099_1673 | Not Available | Positive | 1831928 - 1835986 | 155058.0 |
| transposase dde domain protein | M099_1674 | Not Available | Negative | 1836115 - 1837626 | 59191.7 |
| hypothetical protein | M099_1675 | Not Available | Positive | 1837939 - 1838154 | 8188.85 |
| transposase dde domain protein | M099_1676 | Not Available | Negative | 1838134 - 1838892 | 28723.5 |
| dde_tnp_1-associated family protein | M099_1677 | Not Available | Negative | 1838896 - 1839285 | 14928.2 |
| starch-binding associating with outer membrane family protein | M099_1678 | Not Available | Negative | 1839683 - 1841617 | 71616.1 |
| tonb-linked outer membrane, susc/raga family protein | M099_1679 | Not Available | Negative | 1841632 - 1844667 | 111790.0 |
| glycosyl hydrolases 43 family protein | M099_1680 | Not Available | Negative | 1844745 - 1846481 | 64662.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

