Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transposase dde domain protein | M099_1591 | Not Available | Negative | 1732095 - 1732763 | 25173.9 |
| crispr-associated endoribonuclease cas2 | M099_1592 | Not Available | Negative | 1734696 - 1734986 | 11015.4 |
| crispr-associated endonuclease cas1 | M099_1593 | Not Available | Negative | 1734996 - 1736018 | 38708.3 |
| crispr-associated protein cas4 | M099_1594 | Not Available | Negative | 1736015 - 1736662 | 25070.2 |
| crispr-associated, ct1132 family protein | M099_1595 | Not Available | Negative | 1736690 - 1737574 | 32507.9 |
| crispr-associated family protein | M099_1596 | Not Available | Negative | 1737594 - 1739309 | 65100.2 |
| hypothetical protein | M099_1597 | Not Available | Negative | 1739306 - 1739998 | 27315.8 |
| bro family, n-terminal domain protein | M099_1598 | Not Available | Negative | 1740000 - 1740860 | 33244.5 |
| crispr-associated endonuclease cas3-hd | M099_1599 | Not Available | Negative | 1740871 - 1743096 | 84318.9 |
| histidine--trna ligase | M099_1600 | Not Available | Negative | 1743498 - 1744862 | 50329.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

