Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine ammonia-lyase | M099_1571 | Not Available | Positive | 1713197 - 1714693 | 55180.9 |
| nudix domain protein | M099_1572 | Not Available | Positive | 1714812 - 1715312 | 18986.2 |
| hypothetical protein | M099_1573 | Not Available | Negative | 1716041 - 1716346 | 11429.6 |
| dj-1/pfpi family protein | M099_1574 | Not Available | Negative | 1716351 - 1716968 | 22787.4 |
| hypothetical protein | M099_1575 | Not Available | Negative | 1716971 - 1717117 | 5725.9 |
| putative general stress domain protein | M099_1576 | Not Available | Negative | 1717321 - 1718001 | 26137.8 |
| hypothetical protein | M099_1577 | Not Available | Positive | 1718589 - 1718774 | 7354.04 |
| glycosyl hydrolase | M099_1578 | Not Available | Positive | 1719241 - 1720656 | 53451.8 |
| carbonic anhydrase family protein | M099_1579 | Not Available | Negative | 1720780 - 1721319 | 19937.5 |
| putative membrane protein | M099_1580 | Not Available | Negative | 1721394 - 1721513 | 4395.65 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

