Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trehalase family protein | M099_1531 | Not Available | Negative | 1661438 - 1663507 | 78010.4 |
| starch-binding associating with outer membrane family protein | M099_1532 | Not Available | Negative | 1663539 - 1665074 | 58902.3 |
| tonb-linked outer membrane, susc/raga family protein | M099_1533 | Not Available | Negative | 1665095 - 1668439 | 123554.0 |
| fecr family protein | M099_1534 | Not Available | Negative | 1668656 - 1669642 | 38650.5 |
| rna polymerase sigma-70 factor, expansion 1 family protein | M099_1535 | Not Available | Negative | 1669772 - 1670353 | 22694.6 |
| heme abc exporter, atp-binding protein ccma | M099_1536 | Not Available | Negative | 1670393 - 1672027 | 61961.7 |
| aspt/yide/ybjl antiporter duplication domain protein | M099_1537 | Not Available | Negative | 1672143 - 1673813 | 60144.9 |
| methylmalonyl-coa mutase, small subunit | M099_1538 | Not Available | Positive | 1674099 - 1676009 | 70522.5 |
| methylmalonyl-coa mutase n-terminal domain protein | M099_1539 | Not Available | Positive | 1676019 - 1678169 | 79110.7 |
| hypothetical protein | M099_1540 | Not Available | Positive | 1678233 - 1678355 | 4633.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

