Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mate efflux family protein | M099_1501 | Not Available | Positive | 1626963 - 1628246 | 46497.3 |
| aaa domain protein | M099_1502 | Not Available | Positive | 1628300 - 1628929 | 23564.2 |
| tetratricopeptide repeat family protein | M099_1503 | Not Available | Positive | 1629168 - 1631015 | 72550.0 |
| hypothetical protein | M099_1504 | Not Available | Positive | 1631174 - 1631578 | 14848.9 |
| hypothetical protein | M099_1505 | Not Available | Positive | 1631722 - 1632648 | 35832.6 |
| peptidase c39 family protein | M099_1506 | Not Available | Positive | 1632769 - 1633356 | 23231.6 |
| outer membrane insertion c-terminal signal domain protein | M099_1507 | Not Available | Negative | 1633375 - 1635681 | 87052.3 |
| radical sam additional 4fe4s-binding spasm domain protein | M099_1508 | Not Available | Negative | 1635885 - 1637186 | 50254.5 |
| hypothetical protein | M099_1509 | Not Available | Negative | 1637289 - 1637471 | 6442.35 |
| hypothetical protein | M099_1510 | Not Available | Negative | 1637553 - 1637738 | 6428.26 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

