Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramoylalanine--d-glutamate ligase | M099_0123 | Not Available | Negative | 139015 - 140349 | 49945.6 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | M099_0124 | Not Available | Negative | 140364 - 141632 | 47029.8 |
| udp-n-acetylmuramyl-tripeptide synthetase family protein | M099_0125 | Not Available | Negative | 141645 - 143099 | 53314.3 |
| penicillin binding transpeptidase domain protein | M099_0126 | Not Available | Negative | 143118 - 145298 | 80341.6 |
| hypothetical protein | M099_0127 | Not Available | Negative | 145303 - 145677 | 14479.4 |
| ribosomal rna small subunut methyltransferase h | M099_0128 | Not Available | Negative | 145682 - 146596 | 34425.3 |
| mraz family protein | M099_0129 | Not Available | Negative | 146593 - 147009 | 16384.8 |
| acyltransferase family protein | M099_0130 | Not Available | Positive | 147425 - 148243 | 30976.8 |
| acetyltransferase domain protein | M099_0131 | Not Available | Positive | 148267 - 149247 | 37508.3 |
| dgtpase family protein | M099_0132 | Not Available | Negative | 149336 - 150667 | 50252.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

