Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | M099_1289 | Not Available | Positive | 1410887 - 1411243 | 13541.9 |
| helix-turn-helix domain protein | M099_1290 | Not Available | Negative | 1411362 - 1411688 | 13049.7 |
| helix-turn-helix domain protein | M099_1291 | Not Available | Negative | 1411692 - 1412003 | 12140.7 |
| rtec family protein | M099_1292 | Not Available | Negative | 1412402 - 1413262 | 33739.4 |
| bacterial regulatory helix-turn-helix s, arac family protein | M099_1293 | Not Available | Negative | 1413368 - 1414225 | 32938.4 |
| hypothetical protein | M099_1294 | Not Available | Positive | 1414258 - 1414395 | 5278.35 |
| integrase core domain protein | M099_1295 | Not Available | Positive | 1414597 - 1415394 | 30504.7 |
| putative transposase | M099_1296 | Not Available | Positive | 1415439 - 1415780 | 13510.3 |
| spou rrna methylase family protein | M099_1297 | Not Available | Negative | 1415787 - 1416593 | 29056.5 |
| zinc-binding dehydrogenase family protein | M099_1298 | Not Available | Negative | 1416629 - 1417675 | 38535.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

