Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zeta toxin family protein | M099_1267 | Not Available | Negative | 1387910 - 1388485 | 21483.9 |
| hypothetical protein | M099_1268 | Not Available | Positive | 1388567 - 1388695 | 5043.99 |
| hypothetical protein | M099_1269 | Not Available | Negative | 1388846 - 1389340 | 18600.8 |
| asparagine--trna ligase | M099_1270 | Not Available | Negative | 1389503 - 1390906 | 53432.1 |
| pseudouridine synthase family protein | M099_1271 | Not Available | Negative | 1390929 - 1392395 | 56182.9 |
| adenylosuccinate lyase | M099_1272 | Not Available | Negative | 1392471 - 1393817 | 50932.1 |
| mate efflux family protein | M099_1273 | Not Available | Negative | 1393911 - 1395260 | 49693.5 |
| peptidase m20/m25/m40 family protein | M099_1274 | Not Available | Positive | 1395423 - 1396916 | 55034.0 |
| putative transcriptional regulator | M099_1275 | Not Available | Negative | 1397014 - 1397379 | 14300.2 |
| putative membrane protein | M099_1276 | Not Available | Negative | 1397376 - 1398266 | 33870.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

