Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | M099_1257 | Not Available | Negative | 1382161 - 1382643 | 17376.1 |
| fumarylacetoacetate (faa) hydrolase family protein | M099_1258 | Not Available | Negative | 1382640 - 1383257 | 23340.1 |
| coa binding domain protein | M099_1259 | Not Available | Negative | 1383262 - 1383912 | 24251.6 |
| translation initiation factor sui1 family protein | M099_1260 | Not Available | Positive | 1384030 - 1384368 | 12663.2 |
| translation elongation factor ts | M099_1261 | Not Available | Negative | 1384427 - 1385416 | 35504.8 |
| ribosomal protein s2 | M099_1262 | Not Available | Negative | 1385549 - 1386388 | 30564.9 |
| ribosomal s9/s16 family protein | M099_1263 | Not Available | Negative | 1386521 - 1386907 | 14527.7 |
| ribosomal protein l13 | M099_1264 | Not Available | Negative | 1386914 - 1387375 | 17129.7 |
| hypothetical protein | M099_1265 | Not Available | Negative | 1387470 - 1387592 | 4505.7 |
| hypothetical protein | M099_1266 | Not Available | Negative | 1387675 - 1387920 | 9041.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

