Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | M099_1237 | Not Available | Negative | 1363957 - 1364781 | 30836.1 |
| hypothetical protein | M099_1238 | Not Available | Positive | 1364883 - 1366301 | 54380.8 |
| hemolysin-iii related family protein | M099_1239 | Not Available | Positive | 1366306 - 1366941 | 23650.2 |
| anaerobic ribonucleoside-triphosphate reductase | M099_1240 | Not Available | Positive | 1367236 - 1369512 | 86287.2 |
| anaerobic ribonucleoside-triphosphate reductase activating protein | M099_1241 | Not Available | Positive | 1369518 - 1369976 | 17410.7 |
| rip metalloprotease rsep | M099_1242 | Not Available | Negative | 1370551 - 1371894 | 50887.1 |
| 1-deoxy-d-xylulose 5-phosphate reductoisomerase | M099_1243 | Not Available | Negative | 1371951 - 1373099 | 42392.3 |
| peptidase m23 family protein | M099_1244 | Not Available | Negative | 1373107 - 1373964 | 32093.4 |
| 16s rrna processing protein rimm | M099_1245 | Not Available | Negative | 1373983 - 1374501 | 19831.7 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | M099_1246 | Not Available | Negative | 1374513 - 1375817 | 47644.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

