Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| act domain protein | M099_1227 | Not Available | Positive | 1350166 - 1350594 | 15643.0 |
| response regulator | M099_1228 | Not Available | Negative | 1350637 - 1353363 | 102862.0 |
| fructokinase | M099_1229 | Not Available | Negative | 1353558 - 1354445 | 32432.2 |
| major facilitator superfamily protein | M099_1230 | Not Available | Negative | 1354473 - 1355633 | 41844.0 |
| glycosyl hydrolases family 32 n-terminal domain protein | M099_1231 | Not Available | Negative | 1355649 - 1357532 | 70979.4 |
| hypothetical protein | M099_1232 | Not Available | Negative | 1357681 - 1359999 | 86968.6 |
| dna-binding family protein | M099_1233 | Not Available | Positive | 1360635 - 1361246 | 23004.6 |
| prolipoprotein diacylglyceryl transferase | M099_1234 | Not Available | Negative | 1361288 - 1362094 | 31284.6 |
| diaminopimelate dehydrogenase | M099_1235 | Not Available | Negative | 1362201 - 1363100 | 32291.9 |
| holliday junction dna helicase ruva | M099_1236 | Not Available | Positive | 1363276 - 1363869 | 21141.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

