Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoserine o-succinyltransferase | M099_1187 | Not Available | Negative | 1299789 - 1300706 | 35760.9 |
| alpha-l-fucosidase family protein | M099_1188 | Not Available | Negative | 1300803 - 1302254 | 56240.5 |
| putative beta-galactosidase | M099_1189 | Not Available | Negative | 1302300 - 1304429 | 81107.0 |
| glycosyl hydrolase family 88 family protein | M099_1190 | Not Available | Negative | 1304449 - 1305582 | 43260.8 |
| his kinase a domain protein | M099_1191 | Not Available | Negative | 1305672 - 1309622 | 151856.0 |
| f5/8 type c domain protein | M099_1192 | Not Available | Negative | 1309836 - 1311002 | 42533.1 |
| starch-binding associating with outer membrane family protein | M099_1193 | Not Available | Negative | 1311025 - 1312938 | 73474.8 |
| tonb-linked outer membrane, susc/raga family protein | M099_1194 | Not Available | Negative | 1313032 - 1316106 | 114711.0 |
| hypothetical protein | M099_1195 | Not Available | Positive | 1316143 - 1316277 | 5281.66 |
| glycosyl hydrolase | M099_1196 | Not Available | Positive | 1317000 - 1318508 | 56053.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

