Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolase 53 family protein | M099_0093 | Not Available | Negative | 100527 - 101669 | 43136.1 |
| alpha-amylase, susg | M099_0094 | Not Available | Negative | 101683 - 103764 | 78010.0 |
| hypothetical protein | M099_0095 | Not Available | Negative | 103895 - 105310 | 51141.5 |
| suse outer membrane family protein | M099_0096 | Not Available | Negative | 105333 - 106490 | 41909.4 |
| susd | M099_0097 | Not Available | Negative | 106527 - 108140 | 59445.3 |
| tonb-linked outer membrane, susc/raga family protein | M099_0098 | Not Available | Negative | 108161 - 111226 | 112838.0 |
| alpha-glucosidase | M099_0099 | Not Available | Negative | 111641 - 113857 | 84376.1 |
| alpha amylase, catalytic domain protein | M099_0100 | Not Available | Negative | 113899 - 115728 | 70027.9 |
| putative regulatory protein susr | M099_0101 | Not Available | Positive | 115998 - 117593 | 62535.7 |
| hypothetical protein | M099_0102 | Not Available | Negative | 117700 - 117987 | 10973.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

