Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolases family 2, sugar binding domain protein | M099_1087 | Not Available | Negative | 1177699 - 1179513 | 69360.5 |
| ahpc/tsa family protein | M099_1088 | Not Available | Negative | 1180130 - 1181308 | 44861.1 |
| ahpc/tsa family protein | M099_1089 | Not Available | Negative | 1181316 - 1182692 | 51193.3 |
| starch-binding associating with outer membrane family protein | M099_1090 | Not Available | Negative | 1182704 - 1184095 | 53178.6 |
| tonb-linked outer membrane, susc/raga family protein | M099_1091 | Not Available | Negative | 1184114 - 1187563 | 128749.0 |
| fecr family protein | M099_1092 | Not Available | Negative | 1187666 - 1188496 | 31285.9 |
| transposase dde domain protein | M099_1093 | Not Available | Negative | 1188577 - 1189482 | 35030.2 |
| putative anti-sigma factor domain protein | M099_1094 | Not Available | Negative | 1189584 - 1189784 | 8147.79 |
| rna polymerase sigma factor, sigma-70 family protein | M099_1095 | Not Available | Negative | 1189857 - 1190423 | 22575.3 |
| Trna-his | Not Available | Not Available | Positive | 1190499 - 1190575 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

