Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | M099_1027 | Not Available | Positive | 1104913 - 1106097 | 44988.6 |
| tetratricopeptide repeat family protein | M099_1028 | Not Available | Positive | 1106159 - 1108336 | 86080.4 |
| hypothetical protein | M099_1029 | Not Available | Negative | 1108328 - 1109149 | 31626.6 |
| aspartate-alanine antiporter | M099_1030 | Not Available | Positive | 1109359 - 1110975 | 57876.5 |
| aspartate 4-decarboxylase | M099_1031 | Not Available | Positive | 1110995 - 1112635 | 62643.3 |
| peptidase s41 family protein | M099_1032 | Not Available | Positive | 1112784 - 1114181 | 52267.7 |
| nlpe n-terminal domain protein | M099_1033 | Not Available | Positive | 1114338 - 1114826 | 17145.3 |
| hypothetical protein | M099_1034 | Not Available | Positive | 1114950 - 1115588 | 24046.2 |
| outer membrane beta-barrel domain protein | M099_1035 | Not Available | Positive | 1115630 - 1116256 | 23463.7 |
| glycosyl transferase 2 family protein | M099_1036 | Not Available | Positive | 1116409 - 1117158 | 28446.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

