Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| v-type h(+)-translocating pyrophosphatase | M099_1017 | Not Available | Positive | 1091843 - 1094047 | 77024.7 |
| hypothetical protein | M099_1018 | Not Available | Positive | 1094028 - 1094153 | 4675.91 |
| act domain protein | M099_1019 | Not Available | Negative | 1094168 - 1094584 | 15370.7 |
| amp-binding enzyme family protein | M099_1020 | Not Available | Negative | 1094598 - 1095872 | 47322.9 |
| aminotransferase class i and ii family protein | M099_1021 | Not Available | Negative | 1096006 - 1097313 | 48876.6 |
| pyruvate ferredoxin/flavodoxin oxidoreductase family protein | M099_1022 | Not Available | Negative | 1097318 - 1097899 | 21245.8 |
| thiamine pyrophosphate enzyme, c-terminal tpp binding domain protein | M099_1023 | Not Available | Negative | 1097896 - 1099512 | 58801.5 |
| carbon-nitrogen hydrolase family protein | M099_1024 | Not Available | Negative | 1099536 - 1100297 | 28449.8 |
| tonb family c-terminal domain protein | M099_1025 | Not Available | Negative | 1100489 - 1101175 | 25600.7 |
| transcription-repair coupling factor | M099_1026 | Not Available | Negative | 1101440 - 1104805 | 127078.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

