Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate kinase, fggy family | M099_0987 | Not Available | Positive | 1058072 - 1059670 | 57732.0 |
| transketolase, pyrimidine binding domain protein | M099_0988 | Not Available | Positive | 1059823 - 1061817 | 71692.5 |
| ribose 5-phosphate isomerase b | M099_0989 | Not Available | Positive | 1061814 - 1062248 | 15944.1 |
| hypothetical protein | M099_0990 | Not Available | Positive | 1062355 - 1063452 | 40508.4 |
| tpr repeat family protein | M099_0991 | Not Available | Positive | 1063835 - 1064113 | 10812.7 |
| 4fe-4s binding domain protein | M099_0992 | Not Available | Positive | 1064124 - 1064354 | 8117.04 |
| pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine dip-bdg family protein | M099_0993 | Not Available | Positive | 1064366 - 1065448 | 39184.6 |
| putative membrane protein | M099_0994 | Not Available | Positive | 1065455 - 1065622 | 6434.4 |
| thiamine pyrophosphate enzyme, c-terminal tpp binding domain protein | M099_0995 | Not Available | Positive | 1065641 - 1066405 | 27912.9 |
| pyruvate ferredoxin/flavodoxin oxidoreductase family protein | M099_0996 | Not Available | Positive | 1066419 - 1066961 | 19888.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

