Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chaperone protein dnaj | M099_0977 | Not Available | Positive | 1045443 - 1046618 | 42201.2 |
| bifunctional folc family protein | M099_0978 | Not Available | Positive | 1046713 - 1047999 | 48044.6 |
| aldose 1-epimerase family protein | M099_0979 | Not Available | Positive | 1048094 - 1049188 | 39986.6 |
| major facilitator superfamily protein | M099_0980 | Not Available | Positive | 1049235 - 1050575 | 47498.5 |
| galactokinase | M099_0981 | Not Available | Positive | 1050616 - 1051770 | 42994.0 |
| aldose 1-epimerase family protein | M099_0982 | Not Available | Positive | 1051976 - 1053121 | 41618.1 |
| sodium symporter family protein | M099_0983 | Not Available | Positive | 1053148 - 1054890 | 64455.8 |
| nudix family hydrolase | M099_0984 | Not Available | Positive | 1054966 - 1055643 | 26233.5 |
| l-ribulose-5-phosphate 4-epimerase ulaf | M099_0985 | Not Available | Positive | 1055714 - 1056400 | 24994.8 |
| l-arabinose isomerase | M099_0986 | Not Available | Positive | 1056440 - 1057969 | 57229.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

