Bacteroides fragilis str. 3976T8

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. 3976T8 is a Gram-negative, rod-shaped bacterium classified as a chemoorganotroph, indicating its ability to derive energy from organic compounds. This microorganism is non-motile and does not possess flagella, which suggests a reliance on passive movement within its habitat. It typically exists in a single-cell arrangement and is categorized as an anaerobe, thriving in environments devoid of oxygen. The optimal temperature for B. fragilis str. 3976T8 growth is 37°C, placing it within the mesophilic temperature range, which is conducive to human body temperatures, hinting at its association with host environments. It is noted for having a single replicon and two membranes, which is characteristic of Gram-negative bacteria, contributing to its structural integrity and functionality in various ecological contexts. In terms of ecological relationships, B. fragilis str. 3976T8 is described as free-living, suggesting that it may play roles outside of symbiotic or pathogenic interactions, potentially contributing to the microbial diversity of its habitat. The presence of this organism in host-associated environments underscores its significance in the gut microbiome, where it may participate in complex interactions with other microbial species and influence host health. Understanding its traits can provide insights into its ecological role and potential applications in microbiome research. Accessions for this strain can be found under JGDS00000000.1.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
Strain3976T8

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. 3976T8
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. 3976T8 gbf3976T8.contig.73, whole genome

Gene Summary

Adenine Count

1523198 bp

Thymine Count

1523197 bp

Guanine Count

1184816 bp

Cytosine Count

1181914 bp

Genome Length

5413125 bp

Protein-coding Genes

4831 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
efflux transporter, outer membrane factor (omf) lipo, nodt family proteinM123_3102Not AvailableNegative3719379 - 372075551699.0
rnd transporter, hydrophobe/amphiphile efflux-1 family proteinM123_3103Not AvailableNegative3720759 - 3723905114584.0
efflux transporter, rnd family, mfp subunitM123_3104Not AvailableNegative3723999 - 372518944114.2
patatin-like phospholipase family proteinM123_3105Not AvailablePositive3725508 - 372771882636.2
hypothetical proteinM123_3106Not AvailablePositive3727967 - 372823610268.5
acyltransferase family proteinM123_3107Not AvailablePositive3728353 - 372879616860.9
carbon-nitrogen hydrolase family proteinM123_3108Not AvailablePositive3728803 - 372957329432.2
n-acetylglucosamine-6-phosphate deacetylaseM123_3109Not AvailablePositive3729711 - 373087742838.8
glcnac-pi de-n-acetylase family proteinM123_3110Not AvailablePositive3731244 - 373314871830.7
tyrosine phosphatase family proteinM123_3111Not AvailablePositive3733243 - 373396527492.8

Displaying genes 3401 – 3410 of 4932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.