Bacteroides fragilis str. 3976T8

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. 3976T8 is a Gram-negative, rod-shaped bacterium classified as a chemoorganotroph, indicating its ability to derive energy from organic compounds. This microorganism is non-motile and does not possess flagella, which suggests a reliance on passive movement within its habitat. It typically exists in a single-cell arrangement and is categorized as an anaerobe, thriving in environments devoid of oxygen. The optimal temperature for B. fragilis str. 3976T8 growth is 37°C, placing it within the mesophilic temperature range, which is conducive to human body temperatures, hinting at its association with host environments. It is noted for having a single replicon and two membranes, which is characteristic of Gram-negative bacteria, contributing to its structural integrity and functionality in various ecological contexts. In terms of ecological relationships, B. fragilis str. 3976T8 is described as free-living, suggesting that it may play roles outside of symbiotic or pathogenic interactions, potentially contributing to the microbial diversity of its habitat. The presence of this organism in host-associated environments underscores its significance in the gut microbiome, where it may participate in complex interactions with other microbial species and influence host health. Understanding its traits can provide insights into its ecological role and potential applications in microbiome research. Accessions for this strain can be found under JGDS00000000.1.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
Strain3976T8

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. 3976T8
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. 3976T8 gbf3976T8.contig.73, whole genome

Gene Summary

Adenine Count

1523198 bp

Thymine Count

1523197 bp

Guanine Count

1184816 bp

Cytosine Count

1181914 bp

Genome Length

5413125 bp

Protein-coding Genes

4831 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
reverse transcriptase family proteinM123_2456Not AvailablePositive3067094 - 306799634866.0
crispr-associated endonuclease cas1M123_2457Not AvailablePositive3068005 - 306916544706.6
hypothetical proteinM123_2458Not AvailablePositive3071186 - 30714048364.21
hypothetical proteinM123_2459Not AvailablePositive3071474 - 30716175652.61
serine palmitoyltransferaseM123_2460Not AvailableNegative3071673 - 307285743796.0
lipid kinase, yegs/rv2252/bmru family proteinM123_2461Not AvailablePositive3073092 - 307413538331.3
aspartate--trna ligaseM123_2462Not AvailablePositive3074217 - 307597466218.6
gtra-like family proteinM123_2463Not AvailablePositive3075975 - 307635814910.4
carbon-nitrogen hydrolase family proteinM123_2464Not AvailableNegative3076439 - 307726030691.2
porphyromonas-type peptidyl-arginine deiminase family proteinM123_2465Not AvailableNegative3077335 - 307834538098.4

Displaying genes 2761 – 2770 of 4932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.