Bacteroides fragilis str. 3976T8

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. 3976T8 is a Gram-negative, rod-shaped bacterium classified as a chemoorganotroph, indicating its ability to derive energy from organic compounds. This microorganism is non-motile and does not possess flagella, which suggests a reliance on passive movement within its habitat. It typically exists in a single-cell arrangement and is categorized as an anaerobe, thriving in environments devoid of oxygen. The optimal temperature for B. fragilis str. 3976T8 growth is 37°C, placing it within the mesophilic temperature range, which is conducive to human body temperatures, hinting at its association with host environments. It is noted for having a single replicon and two membranes, which is characteristic of Gram-negative bacteria, contributing to its structural integrity and functionality in various ecological contexts. In terms of ecological relationships, B. fragilis str. 3976T8 is described as free-living, suggesting that it may play roles outside of symbiotic or pathogenic interactions, potentially contributing to the microbial diversity of its habitat. The presence of this organism in host-associated environments underscores its significance in the gut microbiome, where it may participate in complex interactions with other microbial species and influence host health. Understanding its traits can provide insights into its ecological role and potential applications in microbiome research. Accessions for this strain can be found under JGDS00000000.1.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
Strain3976T8

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. 3976T8
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. 3976T8 gbf3976T8.contig.73, whole genome

Gene Summary

Adenine Count

1523198 bp

Thymine Count

1523197 bp

Guanine Count

1184816 bp

Cytosine Count

1181914 bp

Genome Length

5413125 bp

Protein-coding Genes

4831 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i phosphodiesterase / nucleotide pyrophosphatase family proteinM123_4907Not AvailablePositive211762 - 21267333978.3
glycosyl hydrolase family 20, catalytic domain proteinM123_4908Not AvailablePositive212704 - 21423959070.6
putative beta-galactosidaseM123_4909Not AvailablePositive214296 - 21638379990.8
hypothetical proteinM123_4910Not AvailablePositive216383 - 21760345624.8
putative tonb-dependent receptorM123_4911Not AvailableNegative217884 - 22014883886.6
dde superendonuclease family proteinM123_4912Not AvailablePositive220280 - 22081520702.4
hypothetical proteinM123_4913Not AvailableNegative220816 - 22145123090.1
cna b-type domain proteinM123_4914Not AvailableNegative221508 - 22197916321.7
fibrobacter succinogenes major domain family proteinM123_4915Not AvailablePositive222066 - 22266621709.1
hypothetical proteinM123_4916Not AvailablePositive222692 - 2229198441.94

Displaying genes 261 – 270 of 4932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.