Pseudomonas sp. JY-Q

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. JY-Q is characterized by having a single replicon, which contributes to its genomic stability and functionality. The genome of this strain is accessible through the accession number NZ_CP011525.1, which provides a resource for further genetic and functional studies. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse environments, which may include soil, water, and plant-associated habitats. The presence of a single replicon in Pseudomonas sp. JY-Q suggests a streamlined genetic architecture that could enhance its adaptability to fluctuating environmental conditions. In terms of ecological significance, Pseudomonas species, including Pseudomonas sp. JY-Q, are often involved in biogeochemical cycles and have potential applications in bioremediation due to their ability to degrade various pollutants. This ecological role is underscored by their metabolic adaptability, allowing them to utilize a range of organic compounds as carbon sources. Overall, the traits of Pseudomonas sp. JY-Q, particularly its single replicon structure and accessibility via specific genomic data, highlight its potential role in environmental processes and biotechnological applications. Understanding these traits may further elucidate the ecological functions of Pseudomonas species in their natural habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. JY-Q
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. JY-Q
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. JY-Q chromosome, complete genome.

Gene Summary

Adenine Count

1195668 bp

Thymine Count

1193036 bp

Guanine Count

1895488 bp

Cytosine Count

1894633 bp

Genome Length

6178825 bp

Protein-coding Genes

5461 genes

Non-Coding Genes

187 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ferric iron uptake transcriptional regulatorAA098_RS04190Q52083Positive948569 - 94897315200.2
is3 family transposaseAA098_RS27980Not AvailableNegative949204 - 95055851787.6
dna repair protein recnAA098_RS04205A5F379Negative950679 - 95235260917.6
nucleotide exchange factor grpeAA098_RS04210Q88DU1Positive952545 - 95310220532.2
molecular chaperone dnakAA098_RS04215Q88DU2Positive953204 - 95512968774.6
molecular chaperone dnajAA098_RS04220A5W9A2Positive955328 - 95645240126.1
4-hydroxy-tetrahydrodipicolinate reductaseAA098_RS04225Q88DU4Positive956466 - 95726928425.3
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunitAA098_RS04230Q88DU5Positive957535 - 95867140603.4
carbamoyl-phosphate synthase large subunitAA098_RS04235Q88DU6Positive958777 - 961998117417.0
transcription elongation factor greaAA098_RS04240Q88DU7Positive962001 - 96247717375.6

Displaying genes 971 – 980 of 5648 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

307 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 307 metabolites

Health Effects

No health effects information available for this bacterium.