Pseudomonas sp. JY-Q

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. JY-Q is characterized by having a single replicon, which contributes to its genomic stability and functionality. The genome of this strain is accessible through the accession number NZ_CP011525.1, which provides a resource for further genetic and functional studies. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse environments, which may include soil, water, and plant-associated habitats. The presence of a single replicon in Pseudomonas sp. JY-Q suggests a streamlined genetic architecture that could enhance its adaptability to fluctuating environmental conditions. In terms of ecological significance, Pseudomonas species, including Pseudomonas sp. JY-Q, are often involved in biogeochemical cycles and have potential applications in bioremediation due to their ability to degrade various pollutants. This ecological role is underscored by their metabolic adaptability, allowing them to utilize a range of organic compounds as carbon sources. Overall, the traits of Pseudomonas sp. JY-Q, particularly its single replicon structure and accessibility via specific genomic data, highlight its potential role in environmental processes and biotechnological applications. Understanding these traits may further elucidate the ecological functions of Pseudomonas species in their natural habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. JY-Q
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. JY-Q
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. JY-Q chromosome, complete genome.

Gene Summary

Adenine Count

1195668 bp

Thymine Count

1193036 bp

Guanine Count

1895488 bp

Cytosine Count

1894633 bp

Genome Length

6178825 bp

Protein-coding Genes

5461 genes

Non-Coding Genes

187 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nyn domain-containing proteinAA098_RS03520Q31LZ8Positive786836 - 78731517631.1
polc-type dna polymerase iiiAA098_RS03525Q9ZCJ9Positive787325 - 78796022787.7
drug/metabolite exporter yedaAA098_RS03530P0AA72Positive788079 - 78899932003.1
dead/deah box helicaseAA098_RS03535P25888Positive789055 - 79038648828.4
hypothetical proteinAA098_RS29695Not AvailablePositive790459 - 7905874772.84
tigr03862 family flavoproteinAA098_RS03540Not AvailableNegative790822 - 79206043762.0
histone deacetylaseAA098_RS03545P28606Negative792209 - 79312333753.3
radical sam proteinAA098_RS03550Not AvailableNegative793306 - 79369213713.7
radical sam proteinAA098_RS03555Not AvailableNegative793841 - 79436519170.9
radical sam proteinAA098_RS29700Not AvailablePositive794598 - 7948338868.77

Displaying genes 831 – 840 of 5648 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

307 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 307 metabolites

Health Effects

No health effects information available for this bacterium.